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Ernst Ruska-Centre for Microscopy and Spectroscopy with Electrons (ER-C)

Structural Biology (ER-C-3)

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The scientific publications of the Institute ER-C-3 are searchable in the publication databases of the

Central Library of Forschungszentrum

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The following list is a compilation of recent years.

This journal articles, dissertations, theses and articles in books are listed.

Journal Article - Online First Kang, J.-J. ; Shehu, K. ; Sachse, C. ; Jung, F. A. ; Ko, C.-H. ; Barnsley, L. C. ; Jordan, R. ; Papadakis, C. M. (Corresponding author)
A molecular brush with thermoresponsive poly(2-ethyl-2-oxazoline) side chains: a structural investigation
Colloid & polymer science in press, in press (2020) [10.1007/s00396-020-04704-6]2020 Files BibTeX | EndNote: XML, Text | RIS

Journal Article - Online First Beckers, M. ; Mann, D. ; Sachse, C. (Corresponding author)
Structural interpretation of cryo-EM image reconstructions
Progress in biophysics & molecular biology 0, S0079610720300699 (2020) [10.1016/j.pbiomolbio.2020.07.004]2020 Files BibTeX | EndNote: XML, Text | RIS

Journal Article Beckers, M. (Corresponding author) ; Sachse, C. (Corresponding author)
Permutation testing of Fourier shell correlation for resolution estimation of cryo-EM maps
Journal of structural biology 212(1), 107579 - (2020) [10.1016/j.jsb.2020.107579]2020 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Journal Article Beckers, M. (Corresponding author) ; Palmer, C. M. ; Sachse, C. (Corresponding author)
Confidence maps: statistical inference of cryo-EM maps
Acta crystallographica / D Biological crystallography online Section D 76(4), 1-8 (2020) [10.1107/S2059798320002995]2020 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Journal Article Jakobi, A. J. ; Huber, S. T. ; Mortensen, S. A. ; Schultz, S. W. ; Palara, A. ; Kuhm, T. ; Shrestha, B. K. ; Lamark, T. ; Hagen, W. J. H. ; Wilmanns, M. ; Johansen, T. ; Brech, A. ; Sachse, C. (Corresponding author)
Structural basis of p62/SQSTM1 helical filaments and their role in cellular cargo uptake
Nature Communications 11(1), 440 (2020) [10.1038/s41467-020-14343-8]2020 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Journal Article Krueger, D. ; Quinkler, T. ; Mortensen, S. A. ; Sachse, C. ; De Renzis, S. (Corresponding author)
Cross-linker–mediated regulation of actin network organization controls tissue morphogenesis
The journal of cell biology 218(8), 2743 - 2761 (2019) [10.1083/jcb.201811127]2019 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Journal Article Weis, F. ; Beckers, M. ; Hocht, I. ; Sachse, C. (Corresponding author)
Elucidation of the viral disassembly switch of tobacco mosaic virus
EMBO reports 20(11), e48451 (2019) [10.15252/embr.201948451]2019 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Contribution to a book Ktistakis, N. (Editor) ; Florey, O. (Editor) ; Tarafder, A. K. ; Guesdon, A. ; Kuhm, T. ; Sachse, C. (Corresponding author)
Recombinant Expression, Purification, and Assembly of p62 Filaments
2019Autophagy / Ktistakis, Nicholas (Editor) ; New York, NY : Springer New York, 2019, Chapter 1 ; ISSN: 1064-3745=1940-6029 ; ISBN: 978-1-4939-8872-3=978-1-4939-8873-0 ; doi:10.1007/978-1-4939-8873-0 New York, NY : Springer New York, Methods in Molecular Biology 1880, 3 - 15 (2019) [10.1007/978-1-4939-8873-0_1]2019 BibTeX | EndNote: XML, Text | RIS

Journal Article Horos, R. (Corresponding author) ; Büscher, M. ; Sachse, C. ; Hentze, M. W.
Vault RNA emerges as a regulator of selective autophagy
Autophagy 15(8), 1463-1464 (2019) [10.1080/15548627.2019.1609861]2019 Files BibTeX | EndNote: XML, Text | RIS

Journal Article Horos, R. (Corresponding author) ; Büscher, M. ; Kleinendorst, R. ; Alleaume, A.-M. ; Tarafder, A. K. ; Schwarzl, T. ; Dziuba, D. ; Tischer, C. ; Zielonka, E. M. ; Adak, A. ; Castello, A. ; Huber, W. ; Sachse, C. ; Hentze, M. W.
The Small Non-coding Vault RNA1-1 Acts as a Riboregulator of Autophagy
Cell 176(5), 1054 - 1067.e12 (2019) [10.1016/j.cell.2019.01.030]2019 Files BibTeX | EndNote: XML, Text | RIS

Journal Article Dunin-Borkowski, R. ; Mayer, J. ; Sachse, C. ; Tillmann, K. (Corresponding author)
Introduction to a special issue on Frontiers of Aberration Corrected Electron Microscopy in honour of Christian Colliex, Archie Howie and Hannes Lichte on the occasion of their 75th, 85th and 75th birthdays
Ultramicroscopy 203, 1 - (2019) [10.1016/j.ultramic.2019.02.008]2019 BibTeX | EndNote: XML, Text | RIS

Journal Article Beckers, M. ; Jakobi, A. J. ; Sachse, C. (Corresponding author)
Thresholding of cryo-EM density maps by false discovery rate control
IUCrJ 6(1), 1-16 (2019) [10.1107/S2052252518014434]2019 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Journal Article Sachse, C. (Corresponding author) ; Fromm, S.
Journal of Structural Biology – Paper of the Year 2018
Journal of structural biology 204(3), 369 - 370 (2018) [10.1016/j.jsb.2018.11.002]2018 Files BibTeX | EndNote: XML, Text | RIS

Journal Article Zaffagnini, G. ; Savova, A. ; Danieli, A. ; Romanov, J. ; Tremel, S. ; Ebner, M. ; Peterbauer, T. ; Sztacho, M. ; Trapannone, R. ; Tarafder, A. K. ; Sachse, C. ; Martens, S. (Corresponding author)
Phasing out the bad-How SQSTM1/p62 sequesters ubiquitinated proteins for degradation by autophagy
Autophagy 14(7), 1280-1282 (2018) [10.1080/15548627.2018.1462079]2018 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Journal Article Pellegrini, E. ; Desfosses, A. ; Wallmann, A. ; Schulze, W. M. ; Rehbein, K. ; Mas, P. ; Signor, L. ; Gaudon, S. ; Zenkeviciute, G. ; Hons, M. ; Malet, H. ; Gutsche, I. ; Sachse, C. ; Schoehn, G. ; Oschkinat, H. ; Cusack, S. (Corresponding author)
RIP2 filament formation is required for NOD2 dependent NF-κB signalling
Nature Communications 9(1), 4043 (2018) [10.1038/s41467-018-06451-3]2018 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Journal Article Zaffagnini, G. ; Savova, A. ; Danieli, A. ; Romanov, J. ; Tremel, S. ; Ebner, M. ; Peterbauer, T. ; Sztacho, M. ; Trapannone, R. ; Tarafder, A. K. ; Sachse, C. ; Martens, S.
p62 filaments capture and present ubiquitinated cargos for autophagy
The EMBO journal 37(5), e98308 - (2018) [10.15252/embj.201798308]2018 BibTeX | EndNote: XML, Text | RIS

Journal Article Huber, S. T. ; Kuhm, T. ; Sachse, C.
Automated tracing of helical assemblies from electron cryo-micrographs
Journal of structural biology 202(1), 1 - 12 (2018) [10.1016/j.jsb.2017.11.013]2018 BibTeX | EndNote: XML, Text | RIS

Journal Article Jakobi, A. J. ; Wilmanns, M. ; Sachse, C. (Corresponding author)
Model-based local density sharpening of cryo-EM maps
eLife 6, e27131 (2017) [10.7554/eLife.27131]2017 DBCoverage BibTeX | EndNote: XML, Text | RIS

Journal Article Dauden, M. I. ; Kosinski, J. ; Kolaj‐Robin, O. ; Desfosses, A. ; Ori, A. ; Faux, C. ; Hoffmann, N. A. ; Onuma, O. F. ; Breunig, K. D. ; Beck, M. ; Sachse, C. ; Séraphin, B. ; Glatt, S. ; Müller, C. W.
Architecture of the yeast Elongator complex
EMBO reports 18(2), 264 - 279 (2017) [10.15252/embr.201643353]2017 BibTeX | EndNote: XML, Text | RIS

Journal Article Kolovou, A. ; Schorb, M. ; Tarafder, A. ; Sachse, C. ; Schwab, Y. ; Santarella-Mellwig, R.
A new method for cryo-sectioning cell monolayers using a correlative workflow
New York, NY [u.a.] : Elsevier (2017) [10.1016/bs.mcb.2017.03.011]2017 BibTeX | EndNote: XML, Text | RIS

Journal Article Sadian, Y. ; Tafur, L. ; Kosinski, J. ; Jakobi, A. J. ; Wetzel, R. ; Buczak, K. ; Hagen, W. J. ; Beck, M. ; Sachse, C. ; Müller, C. W.
Structural insights into transcription initiation by yeast RNA polymerase I
The EMBO journal 36(18), 2698 - 2709 (2017) [10.15252/embj.201796958]2017 BibTeX | EndNote: XML, Text | RIS

Journal Article Hoffmann, N. A. ; Jakobi, A. J. ; Vorländer, M. K. ; Sachse, C. ; Müller, C. W.
Transcribing RNA polymerase III observed by electron cryomicroscopy
The FEBS journal 283(15), 2811 - 2819 (2016) [10.1111/febs.13732]2016 BibTeX | EndNote: XML, Text | RIS

Journal Article Bertipaglia, C. ; Schneider, S. ; Jakobi, A. J. ; Tarafder, A. K. ; Bykov, Y. S. ; Picco, A. ; Kukulski, W. ; Kosinski, J. ; Hagen, W. J. ; Ravichandran, A. C. ; Wilmanns, M. ; Kaksonen, M. ; Briggs, J. A. ; Sachse, C.
Higher‐order assemblies of oligomeric cargo receptor complexes form the membrane scaffold of the Cvt vesicle
EMBO reports 17(7), 1044 - 1060 (2016) [10.15252/embr.201541960]2016 BibTeX | EndNote: XML, Text | RIS

Journal Article Fromm, S. A. ; Sachse, C.
Cryo-EM Structure Determination Using Segmented Helical Image Reconstruction
New York, NY [u.a.] : Elsevier (2016) [10.1016/bs.mie.2016.05.034]2016 BibTeX | EndNote: XML, Text | RIS

Journal Article Schur, F. K. M. ; Obr, M. ; Hagen, W. J. H. ; Wan, W. ; Jakobi, A. J. ; Kirkpatrick, J. M. ; Sachse, C. ; Kräusslich, H.-G. ; Briggs, J. A. G.
An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation
Science 353(6298), 506 - 508 (2016) [10.1126/science.aaf9620]2016 BibTeX | EndNote: XML, Text | RIS

Journal Article Ohashi, Y. ; Soler, N. ; García Ortegón, M. ; Zhang, L. ; Kirsten, M. L. ; Perisic, O. ; Masson, G. R. ; Burke, J. E. ; Jakobi, A. J. ; Apostolakis, A. A. ; Johnson, C. M. ; Ohashi, M. ; Ktistakis, N. T. ; Sachse, C. ; Williams, R. L.
Characterization of Atg38 and NRBF2, a fifth subunit of the autophagic Vps34/PIK3C3 complex
Autophagy 12(11), 2129 - 2144 (2016) [10.1080/15548627.2016.1226736]2016 BibTeX | EndNote: XML, Text | RIS

Journal Article Tafur, L. ; Sadian, Y. ; Hoffmann, N. A. ; Jakobi, A. J. ; Wetzel, R. ; Hagen, W. J. H. ; Sachse, C. ; Müller, C. W.
Molecular Structures of Transcribing RNA Polymerase I
Molecular cell 64(6), 1135 - 1143 (2016) [10.1016/j.molcel.2016.11.013]2016 BibTeX | EndNote: XML, Text | RIS

Journal Article Klionsky, D. J. (Corresponding author) ; Abdelmohsen, K. ; Abe, A. ; et al
Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)
Autophagy 12(1), 1 - 222 (2016) [10.1080/15548627.2015.1100356]2016 Files BibTeX | EndNote: XML, Text | RIS

Journal Article Ehebauer, M. T. ; Zimmermann, M. ; Jakobi, A. J. ; Noens, E. E. ; Laubitz, D. ; Cichocki, B. ; Marrakchi, H. ; Lanéelle, M.-A. ; Daffé, M. ; Sachse, C. ; Dziembowski, A. ; Sauer, U. ; Wilmanns, M.
Characterization of the Mycobacterial Acyl-CoA Carboxylase Holo Complexes Reveals Their Functional Expansion into Amino Acid Catabolism
PLoS pathogens 11(2), e1004623 - (2015) [10.1371/journal.ppat.1004623]2015 DBCoverage BibTeX | EndNote: XML, Text | RIS

Journal Article Elad, N. ; De Strooper, B. ; Lismont, S. ; Hagen, W. ; Veugelen, S. ; Arimon, M. ; Horre, K. ; Berezovska, O. ; Sachse, C. ; Chavez-Gutierrez, L.
The dynamic conformational landscape of -secretase
Journal of cell science 128(3), 589 - 598 (2015) [10.1242/jcs.164384]2015 BibTeX | EndNote: XML, Text | RIS

Journal Article Fromm, S. A. ; Bharat, T. A. M. ; Jakobi, A. J. ; Hagen, W. J. H. ; Sachse, C.
Seeing tobacco mosaic virus through direct electron detectors
Journal of structural biology 189(2), 87 - 97 (2015) [10.1016/j.jsb.2014.12.002]2015 BibTeX | EndNote: XML, Text | RIS

Journal Article Gutsche, I. ; Desfosses, A. ; Effantin, G. ; Ling, W. L. ; Haupt, M. ; Ruigrok, R. W. H. ; Sachse, C. ; Schoehn, G.
Near-atomic cryo-EM structure of the helical measles virus nucleocapsid
Science 348(6235), 704 - 707 (2015) [10.1126/science.aaa5137]2015 BibTeX | EndNote: XML, Text | RIS

Journal Article Skruzny, M. ; Desfosses, A. ; Prinz, S. ; Dodonova, S. ; Gieras, A. ; Uetrecht, C. ; Jakobi, A. ; Abella, M. ; Hagen, W. H. ; Schulz, J. ; Meijers, R. ; Rybin, V. ; Briggs, J. G. ; Sachse, C. ; Kaksonen, M.
An Organized Co-assembly of Clathrin Adaptors Is Essential for Endocytosis
Developmental cell 33(2), 150 - 162 (2015) [10.1016/j.devcel.2015.02.023]2015 BibTeX | EndNote: XML, Text | RIS

Journal Article Ciuffa, R. ; Lamark, T. ; Tarafder, A. ; Guesdon, A. ; Rybina, S. ; Hagen, W. H. ; Johansen, T. ; Sachse, C.
The Selective Autophagy Receptor p62 Forms a Flexible Filamentous Helical Scaffold
Cell reports 11(5), 748 - 758 (2015) [10.1016/j.celrep.2015.03.062]2015 DBCoverage BibTeX | EndNote: XML, Text | RIS

Journal Article Bharat, T. A. M. ; Murshudov, G. N. ; Sachse, C. ; Löwe, J.
Structures of actin-like ParM filaments show architecture of plasmid-segregating spindles
Nature <London> 523(7558), 106 - 110 (2015) [10.1038/nature14356]2015 BibTeX | EndNote: XML, Text | RIS

Journal Article Johansen, T. ; Sachse, C.
The higher-order molecular organization of p62/SQSTM1
OncoTarget 6(19), (2015) [10.18632/oncotarget.4590]2015 BibTeX | EndNote: XML, Text | RIS

Journal Article Sachse, C.
Single-particle based helical reconstruction—how to make the most of real and Fourier space
AIMS biophysics 2(2), 219 - 244 (2015) [10.3934/biophy.2015.2.219]2015 DBCoverage BibTeX | EndNote: XML, Text | RIS

Journal Article Hoffmann, N. A. ; Jakobi, A. J. ; Moreno-Morcillo, M. ; Glatt, S. ; Kosinski, J. ; Hagen, W. J. H. ; Sachse, C. ; Müller, C. W.
Molecular structures of unbound and transcribing RNA polymerase III
Nature <London> 528(7581), 231 - 236 (2015) [10.1038/nature16143]2015 BibTeX | EndNote: XML, Text | RIS

Journal Article Desfosses, A. ; Ciuffa, R. ; Gutsche, I. ; Sachse, C.
SPRING – An image processing package for single-particle based helical reconstruction from electron cryomicrographs
Journal of structural biology 185(1), 15 - 26 (2014) [10.1016/j.jsb.2013.11.003]2014 BibTeX | EndNote: XML, Text | RIS

Journal Article Afonin, S. ; Glaser, R. W. ; Sachse, C. ; Salgado, J. ; Wadhwani, P. ; Ulrich, A. S.
19F NMR screening of unrelated antimicrobial peptides shows that membrane interactions are largely governed by lipids
Biochimica et biophysica acta / Biomembranes 1838(9), 2260 - 2268 (2014) [10.1016/j.bbamem.2014.03.017]2014 BibTeX | EndNote: XML, Text | RIS

Journal Article Vahokoski, J. ; Bhargav, S. P. ; Desfosses, A. ; Andreadaki, M. ; Kumpula, E.-P. ; Martinez, S. M. ; Ignatev, A. ; Lepper, S. ; Frischknecht, F. ; Sidén-Kiamos, I. ; Sachse, C. ; Kursula, I.
Structural Differences Explain Diverse Functions of Plasmodium Actins
PLoS pathogens 10(4), e1004091 - (2014) [10.1371/journal.ppat.1004091]2014 DBCoverage BibTeX | EndNote: XML, Text | RIS

Journal Article Gombos, L. ; Neuner, A. ; Berynskyy, M. ; Fava, L. L. ; Wade, R. C. ; Sachse, C. ; Schiebel, E.
GTP regulates the microtubule nucleation activity of γ-tubulin
Nature cell biology 15(11), 1317 - 1327 (2013) [10.1038/ncb2863]2013 BibTeX | EndNote: XML, Text | RIS

Journal Article Guichard, P. ; Desfosses, A. ; Maheshwari, A. ; Hachet, V. ; Dietrich, C. ; Brune, A. ; Ishikawa, T. ; Sachse, C. ; Gonczy, P.
Cartwheel Architecture of Trichonympha Basal Body
Science 337(6094), 553 - 553 (2012) [10.1126/science.1222789]2012 BibTeX | EndNote: XML, Text | RIS

Journal Article Bharat, T. A. M. ; Davey, N. E. ; Ulbrich, P. ; Riches, J. D. ; de Marco, A. ; Rumlova, M. ; Sachse, C. ; Ruml, T. ; Briggs, J. A. G.
Structure of the immature retroviral capsid at 8 Å resolution by cryo-electron microscopy
Nature <London> 487(7407), 385 - 389 (2012) [10.1038/nature11169]2012 BibTeX | EndNote: XML, Text | RIS

Journal Article Sachse, C. ; Grigorieff, N. ; Fändrich, M.
Nanoscale Flexibility Parameters of Alzheimer Amyloid Fibrils Determined by Electron Cryo-Microscopy
Angewandte Chemie / International edition 49(7), 1321 - 1323 (2010) [10.1002/anie.200904781]2010 BibTeX | EndNote: XML, Text | RIS

Journal Article Korkhov, V. M. ; Sachse, C. ; Short, J. M. ; Tate, C. G.
Three-Dimensional Structure of TspO by Electron Cryomicroscopy of Helical Crystals
Structure 18(6), 677 - 687 (2010) [10.1016/j.str.2010.03.001]2010 BibTeX | EndNote: XML, Text | RIS

Journal Article Schmidt, M. ; Sachse, C. ; Richter, W. ; Xu, C. ; Fändrich, M. (Corresponding author) ; Grigorieff, N. (Corresponding author)
Comparison of Alzheimer Abeta(1-40) and Abeta(1-42) amyloid fibrils reveals similar protofilament structures.
Proceedings of the National Academy of Sciences of the United States of America 106(47), 19813 - 19818 (2009) [10.1073/pnas.0905007106]2009 pmc Fulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

Journal Article Sachse, C. (Corresponding author) ; Grigorieff, N. ; Fändrich, M.
Elektronenmikroskopie an Alzheimer-Fibrillen
Bioforum 32(2), 26-28 (2009)2009 pmc Fulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

Journal Article Meinhardt, J. ; Sachse, C. ; Hortschansky, P. ; Grigorieff, N. ; Fändrich, M.
Aβ(1-40) Fibril Polymorphism Implies Diverse Interaction Patterns in Amyloid Fibrils
Journal of molecular biology 386(3), 869 - 877 (2009) [10.1016/j.jmb.2008.11.005]2009 BibTeX | EndNote: XML, Text | RIS

Journal Article Low, H. H. ; Sachse, C. ; Amos, L. A. ; Löwe, J.
Structure of a Bacterial Dynamin-like Protein Lipid Tube Provides a Mechanism For Assembly and Membrane Curving
Cell 139(7), 1342 - 1352 (2009) [10.1016/j.cell.2009.11.003]2009 BibTeX | EndNote: XML, Text | RIS

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