Publications 2021
Journal Article
The Alpha Magnetic Spectrometer (AMS) on the international space station: Part II — Results from the first seven years
Physics reports 894, 1-116 (2021) [10.1016/j.physrep.2020.09.003]
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Journal Article
Properties of Iron Primary Cosmic Rays: Results from the Alpha Magnetic Spectrometer
Physical review letters 126(4), 041104 (2021) [10.1103/PhysRevLett.126.041104]
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Journal Article
Properties of Heavy Secondary Fluorine Cosmic Rays: Results from the Alpha Magnetic Spectrometer
Physical review letters 126(8), 081102 (2021) [10.1103/PhysRevLett.126.081102]
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Journal Article
Properties of a New Group of Cosmic Nuclei: Results from the Alpha Magnetic Spectrometer on Sodium, Aluminum, and Nitrogen
Physical review letters 127(2), 021101 (2021) [10.1103/PhysRevLett.127.021101]
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Journal Article
Periodicities in the Daily Proton Fluxes from 2011 to 2019 Measured by the Alpha Magnetic Spectrometer on the International Space Station from 1 to 100 GV
Physical review letters 127(27), 271102 (2021) [10.1103/PhysRevLett.127.271102]
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Journal Article
Erratum: Properties of a New Group of Cosmic Nuclei: Results from the Alpha Magnetic Spectrometer on Sodium, Aluminum, and Nitrogen [Phys. Rev. Lett. 127 , 021101 (2021)]
Physical review letters 127(15), 159901 (2021) [10.1103/PhysRevLett.127.159901]
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Journal Article
Substrate Access Mechanism in a Novel Membrane-Bound Phospholipase A of Pseudomonas aeruginosa Concordant with Specificity and Regioselectivity
Journal of chemical information and modeling 61(11), 5626–5643 (2021) [10.1021/acs.jcim.1c00973]
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Contribution to a conference proceedings/Contribution to a book
Fenix: Distributed e-Infrastructure Services for EBRAINS
Brain-Inspired Computing / Amunts, Katrin (Editor) [https://orcid.org/0000-0001-5828-0867] ; Cham : Springer International Publishing, 2021, Chapter 6 ; ISSN: 0302-9743=1611-3349 ; ISBN: 978-3-030-82426-6=978-3-030-82427-3 ; doi:10.1007/978-3-030-82427-3
BrainComp 2019 - Workshop on Brain-Inspired Computing, BrainComp 2019, CetraroCetraro, Italy, 15 Jul 2019 - 19 Jul 2019
Cham : Springer International Publishing, Lecture Notes in Computer Science 12339, 81 - 89 (2021) [10.1007/978-3-030-82427-3_6]
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Journal Article
Effects of the Nasal Cavity Complexity on the Pharyngeal Airway Fluid Mechanics: A Computational Study
Journal of digital imaging 34, 1120–1133 (2021) [10.1007/s10278-021-00501-x]
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Journal Article
JUWELS Cluster and Booster: Exascale Pathfinder with Modular Supercomputing Architecture at Juelich Supercomputing Centre
Journal of large-scale research facilities 7, A183 (2021) [10.17815/jlsrf-7-183]
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Contribution to a book
Space weather with DLMOS, xPic and GMM
Porting applications to a Modular Supercomputer - Experiences from the DEEP-EST project
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag Jülich, Schriften des Forschungszentrums Jülich IAS Series 48, 109-144 (2021)
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Book/Proceedings
Brain-Inspired Computing; 4th International Workshop, BrainComp 2019 Cetraro, Italy, July 15–19, 2019 Revised Selected Papers
4th International Workshop on Brain-Inspired Computing, CetraroCetraro, Italy, 15 Jul 2019 - 19 Jul 2019
Cham : Springer International Publishing, Lecture Notes in Computer Science 12339, - (2021)
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Journal Article
Brain research challenges supercomputing
Science 374(6571), 1054 - 1055 (2021) [10.1126/science.abl8519]
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Contribution to a conference proceedings/Contribution to a book
Mont-Blanc 2020: Towards Scalable and Power Efficient European HPC Processors
2021 Design, Automation & Test in Europe Conference & Exhibition (DATE) : [Proceedings] - IEEE, 2021. - ISBN 978-3-9819263-5-4 - doi:10.23919/DATE51398.2021.9474093
2021 Design, Automation & Test in Europe Conference & Exhibition (DATE), GrenobleGrenoble, France, 1 Feb 2021 - 5 Feb 2021
136-141 (2021) [10.23919/DATE51398.2021.9474093]
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Journal Article
Lattice Study of QCD Properties under Extreme Conditions: Temperature, Density, Rotation, and Magnetic Field
Physics of particles and nuclei 52(4), 536 - 541 (2021) [10.1134/S1063779621040079]
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Journal Article
Lattice study of QCD at finite chiral density: topology and confinement
The European physical journal / A 57(1), 15 (2021) [10.1140/epja/s10050-020-00326-2]
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Journal Article
Atmospheric Gravity Waves in Aeolus Wind Lidar Observations
Geophysical research letters 48(10), e2021GL092756 (2021) [10.1029/2021GL092756]
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Contribution to a conference proceedings
An HPC-Driven Data Science Platform to Speed-up Time Series Data Analysis of Patients with the Acute Respiratory Distress Syndrome
2021 44th International Convention on Information, Communication and Electronic Technology (MIPRO), OpatijaOpatija, Croatia, 27 Sep 2021 - 1 Oct 2021
340 - 345 (2021) [10.23919/MIPRO52101.2021.9596840]
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Contribution to a conference proceedings
Design and Evaluation of an HPC-based Expert System to speed-up Retail Data Analysis using Residual Networks Combined with Parallel Association Rule Mining and Scalable Recommenders
2021 44th International Convention on Information, Communication and Electronic Technology (MIPRO), OpatijaOpatija, Croatia, 27 Sep 2021 - 1 Oct 2021
274 - 279 (2021) [10.23919/MIPRO52101.2021.9596796]
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Journal Article
Targeting spectrin redox switches to regulate the mechanoproperties of red blood cells
Biological chemistry 402(3), 317–331 (2021) [10.1515/hsz-2020-0293]
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Journal Article
Germany’s next shutdown—Possible scenarios and outcomes
Influenza and other respiratory viruses 15(3), 326-330 (2021) [10.1111/irv.12827]
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Journal Article
Compliance with NPIs and possible deleterious effects on mitigation of an epidemic outbreak
Infectious disease modelling 6, 859 - 874 (2021) [10.1016/j.idm.2021.06.001]
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Report
< QC | HPC >: Quantum for HPC
ETP4HPC 16 p (2021) [10.5281/ZENODO.5555960]
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Journal Article
F/G Region Rigidity is Inversely Correlated to Substrate Promiscuity of Human CYP Isoforms Involved in Metabolism
Journal of chemical information and modeling 61(8), 4023–4030 (2021) [10.1021/acs.jcim.1c00558]
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Journal Article
Corrections to the hadron resonance gas from lattice QCD and their effect on fluctuation-ratios at finite density
Physical review / D 104(9), 094508 (2021) [10.1103/PhysRevD.104.094508]
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Journal Article
Role and Perspective of Molecular Simulation-Based Investigation of RNA–Ligand Interaction: From Small Molecules and Peptides to Photoswitchable RNA Binding
Molecules 26(11), 3384 - (2021) [10.3390/molecules26113384]
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Journal Article
Context aware benchmarking and tuning of a TByte-scale air quality database and web service
Earth science informatics 14, 1597-1607 (2021) [10.1007/s12145-021-00631-4]
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Journal Article
AQ-Bench: a benchmark dataset for machine learning on global air quality metrics
Earth system science data 13(6), 3013 - 3033 (2021) [10.5194/essd-13-3013-2021] special issue: "Benchmark datasets and machine learning algorithms for Earth system science data (ESSD/GMD inter-journal SI)"
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Journal Article
Firewood residential heating – local versus remote influence on the aerosol burden
Atmospheric chemistry and physics 21(8), 5953 - 5964 (2021) [10.5194/acp-21-5953-2021]
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Journal Article
Using physics-informed enhanced super-resolution generative adversarial networks for subfilter modeling in turbulent reactive flows
Proceedings of the Combustion Institute 38(2), 2617 - 2625 (2021) [10.1016/j.proci.2020.06.022]
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Journal Article
Expanding the boundaries of ligand–target modeling by exascale calculations
Wiley interdisciplinary reviews / Computational Molecular Science 11(4), e1535 (2021) [10.1002/wcms.1535]
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Journal Article
Liver cell hydration and integrin signaling
Biological chemistry 402(9), 1033-1045 (2021) [10.1515/hsz-2021-0193]
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Journal Article
Lattice QCD Equation of State at Finite Chemical Potential from an Alternative Expansion Scheme
Physical review letters 126(23), 232001 (2021) [10.1103/PhysRevLett.126.232001]
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Journal Article
Leading hadronic contribution to the muon magnetic moment from lattice QCD
Nature <London> 593(7857), 51–55 (2021) [10.1038/s41586-021-03418-1]
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Journal Article
Topological susceptibility of pure gauge theory using density of states
Physics letters / B 815, 136148 - (2021) [10.1016/j.physletb.2021.136148]
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Journal Article
A pre-registered short-term forecasting study of COVID-19 in Germany and Poland during the second wave
Nature Communications 12(1), 5173 (2021) [10.1038/s41467-021-25207-0]
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Journal Article
Influence of relativistic rotation on the confinement-deconfinement transition in gluodynamics
Physical review / D 103(9), 094515 (2021) [10.1103/PhysRevD.103.094515]
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Journal Article
Divertor power load predictions based on machine learning
Nuclear fusion 61(4), 046023 - (2021) [10.1088/1741-4326/abdb94]
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Journal Article
Interactions of Microtopography, Slope and Infiltration Cause Complex Rainfall‐Runoff Behavior at the Hillslope Scale for Single Rainfall Events
Water resources research 57(7), e2020WR028127 (2021) [10.1029/2020WR028127]
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Journal Article
Trend detection of atmospheric time series
Elementa 9(1), 00035 (2021) [10.1525/elementa.2021.00035]
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Contribution to a conference proceedings/Contribution to a book
Integration of Parallel I/O Library and Flash Native Accelerators: An Evaluation of SIONlib with IME
Proceedings of the Workshop on Challenges and Opportunities of Efficient and Performant Storage Systems
EuroSys '21: Sixteenth European Conference on Computer Systems, Online EventOnline Event, UK, 26 Apr 2021 - 28 Apr 2021
ACM New York, NY, USA, CHEOPS '21 8 pp. (2021) [10.1145/3439839.3458736]
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Journal Article
The outflow of Asian biomass burning carbonaceous aerosol into the upper troposphere and lower stratosphere in spring: radiative effects seen in a global model
Atmospheric chemistry and physics 21(18), 14371 - 14384 (2021) [10.5194/acp-21-14371-2021]
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Contribution to a conference proceedings
Effect of Pre-Training Scale on Intra- and Inter-Domain Full and Few-Shot Transfer Learning for Natural and Medical X-Ray Chest Images
Medical Imaging Meets NeurIPS (MedNeurIPS), Sydney / onlineSydney / online, Australia, 6 Dec 2021 - 14 Dec 2021
1-6 (2021)
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Journal Article
Three-dimensional first principles simulation of a hydrogen discharge
Plasma physics and controlled fusion 63(4), 045012 - (2021) [10.1088/1361-6587/abdd75]
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Contribution to a conference proceedings/Contribution to a book
First principles 3D simulation of tokamak plasma breakdown
47th EPS Plasma Physics conference, OnlineOnline, Online, 21 Jun 2021 - 25 Jun 2021
Europhysics conference abstracts 45A, 141-144 (2021) [10.34734/FZJ-2023-05543]
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Journal Article
Theory of circularly polarized harmonic generation using bi-colour lasers in underdense plasmas
Plasma physics and controlled fusion 63(3), 035023 - (2021) [10.1088/1361-6587/abd9e1]
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Dissertation / PhD Thesis
Optical control of laser-driven X-ray and XUV radiation sources
RWTH Aachen xii, 111 p. (2021) [10.18154/RWTH-2021-10211] = Dissertation, RWTH Aachen, 2021
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Journal Article
The Trimeric Major Capsid Protein of Mavirus is stabilized by its Interlocked N-termini Enabling Core Flexibility for Capsid Assembly
Journal of molecular biology 433(7), 166859 - (2021) [10.1016/j.jmb.2021.166859]
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Journal Article
Back cover
Nanoscale 14(1), 206 - 206 (2021) [10.1039/D2NR90005J]
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Journal Article
Can Constraint Network Analysis guide the identification phase of KnowVolution? A case study on improved thermostability of an endo-β-glucanase
Computational and structural biotechnology journal 19, 743-751 (2021) [10.1016/j.csbj.2020.12.034]
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Contribution to a conference proceedings/Contribution to a book
Evolutionary Optimization of Neural Architectures in Remote Sensing Classification Problems
2021 IEEE International Geoscience and Remote Sensing Symposium IGARSS : [Proceedings] - IEEE, 2021. - ISBN 978-1-6654-0369-6 - doi:10.1109/IGARSS47720.2021.9554309
IEEE International Geoscience and Remote Sensing Symposium, IGARSS 2021, BrusselsBrussels, Belgium, 12 Jul 2021 - 16 Jul 2021
IEEE 1587 - 1590 (2021) [10.1109/IGARSS47720.2021.9554309]
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Journal Article
Structural and Biochemical Analysis of the Dual Inhibition of MG-132 against SARS-CoV-2 Main Protease (Mpro/3CLpro) and Human Cathepsin-L
International journal of molecular sciences 22(21), 11779 - (2021) [10.3390/ijms222111779]
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Journal Article
Assembly of Multi‐Spheroid Cellular Architectures by Programmable Droplet Merging
Advanced materials 33(4), 2006434 - (2021) [10.1002/adma.202006434]
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Journal Article
Orbital magnetoelectric effect in zigzag nanoribbons of p-band systems
Physical review / B 104(16), 165403 (2021) [10.1103/PhysRevB.104.165403]
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Journal Article
Binding of Androgen- and Estrogen-Like Flavonoids to Their Cognate (Non)Nuclear Receptors: A Comparison by Computational Prediction
Molecules 26(6), 1613 - (2021) [10.3390/molecules26061613]
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Journal Article
Discovery of new acetylcholinesterase inhibitors for Alzheimer’s disease: virtual screening and in vitro characterisation
Journal of enzyme inhibition and medicinal chemistry 36(1), 491 - 496 (2021) [10.1080/14756366.2021.1876685]
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Journal Article
Mapping Yearly Fine Resolution Global Surface Ozone through the Bayesian Maximum Entropy Data Fusion of Observations and Model Output for 1990–2017
Environmental science & technology 55(8), 4389 - 4398 (2021) [10.1021/acs.est.0c07742]
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Contribution to a conference proceedings/Contribution to a book
Quantum Support Vector Machine Algorithms for Remote Sensing Data Classification
2021 IEEE International Geoscience and Remote Sensing Symposium IGARSS : [Proceedings] - IEEE, 2021. - ISBN 978-1-6654-0369-6 - doi:10.1109/IGARSS47720.2021.9554802
IEEE International Geoscience and Remote Sensing Symposium (IGARSS), BrusselsBrussels, Belgium, 12 Jul 2021 - 16 Jul 2021
IEEE 2608-2611 (2021) [10.1109/IGARSS47720.2021.9554802]
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Journal Article
Post-acceleration of electron bunches from laser-irradiated nanoclusters
Physica scripta 96, 055603 (2021) [10.1088/1402-4896/abe77f]
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Book/Dissertation / PhD Thesis
Structural plasticity as a connectivity generation and optimization algorithm in neural networks
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Schriften des Forschungszentrums Jülich IAS Series 47, 167 pp. (2021) = Dissertation, RWTH Aachen University, 2021
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Contribution to a conference proceedings
Generative Adversarial Deep Learning with Solar Images
AGU Fall Meeting, AGU, New OrleansNew Orleans, USA, 13 Dec 2021 - 17 Dec 2021
1 pp. (2021)
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Journal Article
Aqueous ionic liquids redistribute local enzyme stability via long-range perturbation pathways
Computational and structural biotechnology journal 19, 4248-4264 (2021) [10.1016/j.csbj.2021.07.001]
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Contribution to a book
Earth Science with NextDBSCAN, NextSVM and Deep Learning
Porting applications to a Modular Supercomputer - Experiences from the DEEP-EST project
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag Jülich, Schriften des Forschungszentrums Jülich IAS Series 48, 145-166 (2021)
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Journal Article
Convolutional neural networks for high throughput screening of catalyst layer inks for polymer electrolyte fuel cells
RSC Advances 11(51), 32126 - 32134 (2021) [10.1039/D1RA05324H]
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Journal Article
The role of tropical volcanic eruptions in exacerbating Indian droughts
Scientific reports 11(1), 2714 (2021) [10.1038/s41598-021-81566-0]
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Contribution to a conference proceedings/Contribution to a book
Detecting Disaster Before It Strikes: On the Challenges of Automated Building and Testing in HPC Environments
Tools for High Performance Computing 2018 / 2019 / Mix, Hartmut (Editor) ; Cham : Springer International Publishing, 2021, Chapter 1 ; ISBN: 978-3-030-66056-7 ; doi:10.1007/978-3-030-66057-4
12th International Parallel Tools Workshop, StuttgartStuttgart, Germany, 17 Sep 2018 - 18 Sep 2018
Cham : Springer International Publishing 3-26 (2021) [10.1007/978-3-030-66057-4_1]
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Journal Article
Algorithmic distinction of ARDS and Heart Failure in ICU data from medical embedded systems by using a computer model
4th IFAC Conference on Embedded Systems, Computational Intelligence and Telematics in Control, CESCIT 2021, ValenciennesValenciennes, France, 5 Jul 2021 - 7 Jul 2021
IFAC-PapersOnLine 54(4), 135 - 140 (2021) [10.1016/j.ifacol.2021.10.023] special issue: "4th IFAC Conference on Embedded Systems, Computational Intelligence and Telematics in Control CESCIT 2021: Valenciennes, France, 5-7 July 2021"
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Journal Article
Glutamine synthetase as a central element in hepatic glutamine and ammonia metabolism: novel aspects
Biological chemistry 402(9), 1063-1072 (2021) [10.1515/hsz-2021-0166]
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Journal Article
Parallel hybrid Monte Carlo / Molecular Statics for Simulation of Solute Segregation in Solids
Journal of physics / Conference Series 1740(1), 012001 (2021) [10.1088/1742-6596/1740/1/012001]
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Journal Article
The many facets of bile acids in the physiology and pathophysiology of the human liver
Biological chemistry 402(9), 1047-1062 (2021) [10.1515/hsz-2021-0156]
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Journal Article
Garden optimization problems for benchmarking quantum annealers
Quantum information processing 20(9), 305 (2021) [10.1007/s11128-021-03226-6]
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Contribution to a conference proceedings/Contribution to a book
Twelve Ways to Fool the Masses When Giving Parallel-in-Time Results
Parallel-in-Time Integration Methods
9th Workshop on Parallel-in-Time Integration, PinT9, onlineonline, online, 8 Jun 2020 - 12 Jun 2020
Cham : Springer International Publishing, Springer Proceedings in Mathematics & Statistics 356, 81 - 94 (2021) [10.1007/978-3-030-75933-9_4]
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Journal Article
JUST: Large-Scale Multi-Tier Storage Infrastructure at the Jülich Supercomputing Centre
Journal of large-scale research facilities 7, A180 (2021) [10.17815/jlsrf-7-180]
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Contribution to a conference proceedings
A Web-Based Service Portal to Steer Numerical Simulations on High-Performance Computers
8th European Medical and Biological Engineering Conference, EMBEC 2020, PortorozPortoroz, Slovenia, 29 Nov 2020 - 3 Dec 2020
Springer, Cham 80, 57-65 (2021) [10.1007/978-3-030-64610-3_8]
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Journal Article
The crossover line in the (T, μ)-phase diagram of QCD
Nuclear physics <Amsterdam> / A 1005, 121782 - (2021) [10.1016/j.nuclphysa.2020.121782]
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Journal Article
Quantum Nondemolition Dispersive Readout of a Superconducting Artificial Atom Using Large Photon Numbers
Physical review applied 15(6), 064030 (2021) [10.1103/PhysRevApplied.15.064030]
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Contribution to a conference proceedings/Contribution to a book
A Middleware Supporting Data Movement in Complex and Software-Defined Storage and Memory Architectures
High Performance Computing / Jagode, Heike (Editor)
ISC High Performance 2021, FrankfurtFrankfurt, Germany, 22 Jun 2021 - 25 Jun 2021
Heidelberg : Springer, Lecture Notes in Computer Science 12761, 346 - 357 (2021) [10.1007/978-3-030-90539-2_23]
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Structure and efflux mechanism of the yeast pleiotropic drug resistance transporter Pdr5
Nature Communications 12(1), 5254 (2021) [10.1038/s41467-021-25574-8]
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On the influence of prior information evaluated by fully Bayesian criteria in a personalized whole-brain model of epilepsy spread
PLoS Computational Biology 17(7), e1009129 - (2021) [10.1371/journal.pcbi.1009129]
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A Practical Approach for Estimating the Optimum Tilt Angle of a Photovoltaic Panel for a Long Period—Experimental Recorded Data
Solar 1(1), 41 - 51 (2021) [10.3390/solar1010005]
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Electronic instabilities in Penrose quasicrystals: Competition, coexistence, and collaboration of order
Physical review research 3(2), 023180 (2021) [10.1103/PhysRevResearch.3.023180]
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Stratospheric gravity waves over the mountainous island of South Georgia: testing a high-resolution dynamical model with 3-D satellite observations and radiosondes
Atmospheric chemistry and physics 21(10), 7695 - 7722 (2021) [10.5194/acp-21-7695-2021]
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Foamy Viruses, Bet, and APOBEC3 Restriction
Viruses 13(3), 504 (2021) [10.3390/v13030504]
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Reactive Metabolites from Thiazole-Containing Drugs: Quantum Chemical Insights into Biotransformation and Toxicity
Chemical research in toxicology 34(6), 1503–1517 (2021) [10.1021/acs.chemrestox.0c00450]
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Random State Technology
Journal of the Physical Society of Japan 90(1), 012001 - (2021) [10.7566/JPSJ.90.012001]
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A new method to detect and classify polar stratospheric nitric acid trihydrate clouds derived from radiative transfer simulations and its first application to airborne infrared limb emission observations
Atmospheric measurement techniques 14(3), 1893 - 1915 (2021) [10.5194/amt-14-1893-2021]
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JUWELS Booster – A Supercomputer for Large-Scale AI Research
High Performance Computing / Jagode, Heike (Editor)
ISC High Performance 2021, ISC21, DigitalDigital, Germany, 24 Jun 2021 - 2 Jul 2021
Lecture Notes in Computer Science 12761, 453 - 468 (2021) [10.1007/978-3-030-90539-2_31]
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Contribution to a book
High Energy Physics with CMSSW
Porting applications to a Modular Supercomputer - Experiences from the DEEP-EST project
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag Jülich, Schriften des Forschungszentrums Jülich IAS Series 48, 167-185 (2021)
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Elastic transmission eigenvalues and their computation via the method of fundamental solutions
Applicable analysis 100(16), 3445-3462 (2021) [10.1080/00036811.2020.1721473]
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The hot spots conjecture can be false: Some numerical examples
Advances in computational mathematics 47(6), 85 (2021) [10.1007/s10444-021-09911-5]
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IntelliO3-ts v1.0: a neural network approach to predict near-surface ozone concentrations in Germany
Geoscientific model development 14(1), 1 - 25 (2021) [10.5194/gmd-14-1-2021]
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A Picture Is Worth a Thousand Numbers—Enhancing Cube’s Analysis Capabilities with Plugins
Tools for High Performance Computing 2018 / 2019 / Mix, Hartmut (Editor) ; Cham : Springer International Publishing, 2021, Chapter 13 ; ISBN: 978-3-030-66056-7 ; doi:10.1007/978-3-030-66057-4
Tools for High Performance Computing 2019, DresdenDresden, Fed Rep Germany, 2 Sep 2019 - 3 Sep 2019
Cham : Springer International Publishing 237 - 259 (2021) [10.1007/978-3-030-66057-4_13]
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Second Quantization and Jordan-Wigner Representations
Simulating Correlations with Computers
Autumn School on Correlated Electrons, correl21, JülichJülich, Germany, 20 Sep 2021 - 24 Sep 2021
Jülich : Forschungszentrum Jülich, Modeling and Simulation 11, 1.1-1.29 (2021)
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Numerical Analysis of Oscillatory Flows in the Human Brain by a Lattice-Boltzmann Method
14th WCCM-ECCOMAS Congress : [Proceedings] - CIMNE, 2021. - ISBN - doi:10.23967/wccm-eccomas.2020.226
14th WCCM-ECCOMAS Congress, digitaldigital, digital, 11 Jan 2021 - 15 Jan 2021
1-12 (2021) [10.23967/wccm-eccomas.2020.226]
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A CUDA fast multipole method with highly efficient M2L far field evaluation
The international journal of high performance computing applications 35(1), 97 - 117 (2021) [10.1177/1094342020964857]
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Rational Spectral Filters with Optimal Convergence Rate
SIAM journal on scientific computing 43(4), A2660–A2684 (2021) [10.1137/20M1313933]
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Evaluation of 3‐ and 4‐Phenoxybenzamides as Selective Inhibitors of the Mono‐ADP‐Ribosyltransferase PARP10
ChemistryOpen 10(10), 939 - 948 (2021) [10.1002/open.202100087]
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More on the flavor dependence of mϱ/fπ
Journal of high energy physics 2021(7), 202 (2021) [10.1007/JHEP07(2021)202]
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QCD transition at the physical point, and its scaling window from twisted mass Wilson fermions
Physics letters / B 823, 136749 - (2021) [10.1016/j.physletb.2021.136749]
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A modeler's guide to handle complexity in energy systems optimization
Advances in applied energy 4, 100063 - (2021) [10.1016/j.adapen.2021.100063]
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Convergence of multilevel spectral deferred corrections
Communications in applied mathematics and computational science 16(2), 227 - 265 (2021) [10.2140/camcos.2021.16.227]
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Book
Porting applications to a Modular Supercomputer - Experiences from the DEEP-EST project
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Schriften des Forschungszentrums Jülich IAS Series 48, 254 pp. (2021)
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Best Practices Guide
Porting applications to a Modular Supercomputer - Experiences from the DEEP-EST project
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag Jülich, Schriften des Forschungszentrums Jülich IAS Series 48, 187-232 (2021) [10.34734/FZJ-2022-01060]
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On strong-scaling and open-source tools for analyzing atom probe tomography data
npj computational materials 7(1), 21 (2021) [10.1038/s41524-020-00486-1]
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Chase-Escape percolation on the 2D square lattice
Physica / A 577, 126072 - (2021) [10.1016/j.physa.2021.126072]
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Identification of Inhibitors of SARS-CoV-2 3CL-Pro Enzymatic Activity Using a Small Molecule in Vitro Repurposing Screen
ACS pharmacology & translational science 4(3), 1096 - 1110 (2021) [10.1021/acsptsci.0c00216]
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MLAir (v1.0) – a tool to enable fast and flexible machine learning on air data time series
Geoscientific model development 14(3), 1553 - 1574 (2021) [10.5194/gmd-14-1553-2021]
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Polarized proton acceleration in ultraintense laser interaction with near-critical-density plasmas
Physical review / E 104(1), 015216 (2021) [10.1103/PhysRevE.104.015216]
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Lessons learned from urgent computing in Europe: Tackling the COVID-19 pandemic
Proceedings of the National Academy of Sciences of the United States of America 118(46), e2024891118 - (2021) [10.1073/pnas.2024891118]
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Simulations of laser plasma instabilities using a particle-mesh method
Plasma physics and controlled fusion 63(9), 095005 - (2021) [10.1088/1361-6587/ac11b8]
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Mitigating parametric instabilities in plasmas by sunlight-like lasers
Matter and radiation at extremes 6(5), 055902 - (2021) [10.1063/5.0054653]
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Future Medical Artificial Intelligence Application Requirements and Expectations of Physicians in German University Hospitals: Web-Based Survey
Journal of medical internet research 23(3), e26646 - (2021) [10.2196/26646]
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Combining Different Docking Engines and Consensus Strategies to Design and Validate Optimized Virtual Screening Protocols for the SARS-CoV-2 3CL Protease
Molecules 26(4), 797 - (2021) [10.3390/molecules26040797]
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Long-Term Desynchronization by Coordinated Reset Stimulation in a Neural Network Model With Synaptic and Structural Plasticity
Frontiers in physiology 12, 716556 (2021) [10.3389/fphys.2021.716556]
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Algorithmic surveillance of I CU patients with acute respiratory distress syndrome (ASIC): protocol for a multicentre stepped-wedge cluster randomised quality improvement strategy
BMJ open 11(4), e045589 - (2021) [10.1136/bmjopen-2020-045589]
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Towards blood flow in the virtual human: efficient self-coupling of HemeLB
Interface focus 11(1), 20190119 - (2021) [10.1098/rsfs.2019.0119]
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Quantum annealing with trigger Hamiltonians: Application to 2-satisfiability and nonstoquastic problems
Physical review / A 104(3), 032421 (2021) [10.1103/PhysRevA.104.032421]
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Book/Dissertation / PhD Thesis
Federated Access to Collaborative Data and Compute Infrastructures
129 p (2021) = Dissertation, University of Iceland, 2021
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Programming Quantum Computers
Simulating Correlations with Computers
Autumn School on Correlated Electrons, JülichJülich, Germany, 20 Sep 2021 - 24 Sep 2021
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Schriften des Forschungszentrums Jülich, Modeling and Simulation 11, 323-358 (2021)
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Scale setting the Möbius domain wall fermion on gradient-flowed HISQ action using the omega baryon mass and the gradient-flow scales t 0 and w 0
Physical review / D 103(5), 054511 (2021) [10.1103/PhysRevD.103.054511]
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Interdependence of a mechanosensitive anion channel and glutamate receptors in distal wound signaling
Science advances 7(37), eabg4298 (2021) [10.1126/sciadv.abg4298]
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Herschel observations of extraordinary sources: full Herschel /HIFI molecular line survey of Sagittarius B2(M)
Astronomy and astrophysics 651, A9 - (2021) [10.1051/0004-6361/202040203]
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Multiple magnetic states of CoPc molecule on a two-dimensional layer of NbSe 2
Journal of physics / Condensed matter 33(20), 205802 (2021) [10.1088/1361-648X/abed64]
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TopSuite Web Server: A Meta-Suite for Deep-Learning-Based Protein Structure and Quality Prediction
Journal of chemical information and modeling 61(2), 548–553 (2021) [10.1021/acs.jcim.0c01202]
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TopDomain: Exhaustive Protein Domain Boundary Metaprediction Combining Multisource Information and Deep Learning
Journal of chemical theory and computation 17(7), 4599–4613 (2021) [10.1021/acs.jctc.1c00129]
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TopProperty: Robust Metaprediction of Transmembrane and Globular Protein Features Using Deep Neural Networks
Journal of chemical theory and computation 17(11), 7281 - 7289 (2021) [10.1021/acs.jctc.1c00685]
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Computational Analyses of the AtTPC1 (Arabidopsis Two-Pore Channel 1) Permeation Pathway
International journal of molecular sciences 22(19), 10345 - (2021) [10.3390/ijms221910345]
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Influence of Noisy Environments on Behavior of HPC Applications
Lobachevskii journal of mathematics 42(7), 1560 - 1570 (2021) [10.1134/S1995080221070192]
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Promiscuous Esterases Counterintuitively Are Less Flexible than Specific Ones
Journal of chemical information and modeling 61(5), 2383 - 2395 (2021) [10.1021/acs.jcim.1c00152]
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Dissertation / PhD Thesis
Impact of enzyme rigidity and flexibility on stability against environmental influences, promiscuity, and expression on large-scale
251 p. (2021) = Dissertation, Heinrich-Heine-Universität Düsseldorf, 2021
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The Antiferromagnetic Character of the Quantum Phase Transition in the Hubbard Model on the Honeycomb Lattice
Physical review / B 104(15), 155142 (2021) [10.1103/PhysRevB.104.155142]
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The Ising model with Hybrid Monte Carlo
Computer physics communications 265, 107978 (2021) [10.1016/j.cpc.2021.107978]
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Bachelor Thesis
Entwicklung und Implementierung eines Galerkinverfahrens zur numerischen Lösung eines Eigenwertproblems zu einer PDG vierter Ordnung für spezielle Geometrien
55 p. (2021) = Bachelorarbeit, Fachhochschule Aachen, 2021
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Book/Proceedings
Simulating Correlations with Computers
Autumn School organized by the Institute for Advanced Simulation at Forschungszentrum Jülich, JülichJülich, 20 Sep 2021 - 24 Sep 2021
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Schriften des Forschungszentrums Jülich Modeling and Simulation 11, 420 pp. (2021)
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A promiscuous ancestral enzyme´s structure unveils protein variable regions of the highly diverse metallo-β-lactamase family
Communications biology 4(1), 132 (2021) [10.1038/s42003-021-01671-8]
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Determining Gravity Wave Sources and Propagation in the Southern Hemisphere by Ray‐Tracing AIRS Measurements
Geophysical research letters 48(2), e2020GL088621 (2021) [10.1029/2020GL088621]
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The Inhibitory Effect of a Coronavirus Spike Protein Fragment with ACE2
Biophysical journal 120(6), 1001-1010 (2021) [10.1016/j.bpj.2020.08.022]
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CORE-MD II: A fast, adaptive, and accurate enhanced sampling method
The journal of chemical physics 155(10), 104114 - (2021) [10.1063/5.0063664]
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Contribution to a book
Molecular Dynamics with GROMACS
Porting applications to a Modular Supercomputer - Experiences from the DEEP-EST project
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag Jülich, Schriften des Forschungszentrums Jülich IAS Series 48, 47-80 (2021)
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Significant interstellar object production by close stellar flybys
Astronomy and astrophysics 651, A38 - (2021) [10.1051/0004-6361/202140587]
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Interstellar Objects Follow the Collapse of Molecular Clouds
The astrophysical journal / 1 921(2), 168 - (2021) [10.3847/1538-4357/ac0c10]
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Close Stellar Flybys Common in Low-mass Clusters
The astrophysical journal / 1 921(1), 90 - (2021) [10.3847/1538-4357/ac19aa]
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Journal Article
Allosteric signaling in C-linker and cyclic nucleotide-binding domain of HCN2 channels
Biophysical journal 120(5), 950-963 (2021) [10.1016/j.bpj.2021.01.017]
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Contribution to a book
Neuroscience with NEST, Arbor and Elephant
Porting applications to a Modular Supercomputer - Experiences from the DEEP-EST project
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag Jülich, Schriften des Forschungszentrums Jülich IAS Series 48, 27-46 (2021)
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Evidence for a credit-card-swipe mechanism in the human PC floppase ABCB4
Structure 29(10), 1144-1155.e5 (2021) [10.1016/j.str.2021.05.013]
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QCD Transition Line and Correlators of Conserved Charges from Lattice QCD
On-line Meeting Criticality in QCD and the Hadron Resonance Gas, onlineonline, online, 29 Jul 2020 - 31 Jul 2020
Acta physica Polonica / B / Proceedings supplement 14(2), 281 pp. (2021) [10.5506/APhysPolBSupp.14.281]
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Journal Article
A climate service for ecologists: sharing pre-processed EURO-CORDEX regional climate scenario data using the eLTER Information System
Earth system science data 13(2), 631 - 644 (2021) [10.5194/essd-13-631-2021]
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Practice and Experience in Using Parallel and Scalable Machine Learning in Remote Sensing from HPC Over Cloud to Quantum Computing
2021 IEEE International Geoscience and Remote Sensing Symposium IGARSS : [Proceedings] - IEEE, 2021. - ISBN 978-1-6654-0369-6 - doi:10.1109/IGARSS47720.2021.9554656
IEEE International Geoscience and Remote Sensing Symposium, IGARSS 2021, BrusselsBrussels, Belgium, 12 Jul 2021 - 16 Jul 2021
IEEE 1571-1582 (2021) [10.1109/IGARSS47720.2021.9554656]
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Practice and Experience in using Parallel and Scalable Machine Learning with Heterogenous Modular Supercomputing Architectures
IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), PortlandPortland, USA, 17 Jun 2021 - 21 Jun 2021
IEEE 76-85 (2021) [10.1109/IPDPSW52791.2021.00019]
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Contribution to a book
Radio astronomy with the GPU Correlator, the GPU Imager and the FPGA Imager
Porting applications to a Modular Supercomputer - Experiences from the DEEP-EST project
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag Jülich, Schriften des Forschungszentrums Jülich IAS Series 48, 81-108 (2021)
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Dissertation / PhD Thesis
Multi-scale modeling of tumor development
115 p. (2021) = Dissertation, HHU Düsseldorf, 2021
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Journal Article
An Enhanced Sampling Approach to the Induced Fit Docking Problem in Protein-Ligand Binding: the case of mono-ADPribosylationhydrolases inhibitors
Journal of chemical theory and computation 17(12), 7899–7911 (2021) [10.1021/acs.jctc.1c00649]
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Machine-Learning-Based Control of Perturbed and Heated Channel Flows
High Performance Computing / Jagode, Heike (Editor)
ISC High Performance 2021, ISC2021, FrankfurtFrankfurt, Germany, 24 Jun 2021 - 2 Jul 2021
Springer, Lecture Notes in Computer Science 12761, 7 - 22 (2021) [10.1007/978-3-030-90539-2_1]
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The behavior of high-CAPE (convective available potential energy) summer convection in large-domain large-eddy simulations with ICON
Atmospheric chemistry and physics 21(6), 4285 - 4318 (2021) [10.5194/acp-21-4285-2021]
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Tracking the Footprints of Spin Fluctuations: A MultiMethod, MultiMessenger Study of the Two-Dimensional Hubbard Model
Physical review / X 11(1), 011058 (2021) [10.1103/PhysRevX.11.011058]
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Journal Article
Erratum: “AMBER-DYES in AMBER: Implementation of fluorophore and linker parameters into AmberTools” [J. Chem. Phys. 152, 221103 (2020)]
The journal of chemical physics 154(10), 109901 - (2021) [10.1063/5.0046589]
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Journal Article
Thermodynamic profile of mutual subunit control in a heteromeric receptor
Proceedings of the National Academy of Sciences of the United States of America 118(30), e2100469118 (2021) [10.1073/pnas.2100469118]
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Journal Article
40 Years of Research on Polybrominated Diphenyl Ethers (PBDEs)—A Historical Overview and Newest Data of a Promising Anticancer Drug
Molecules 26(4), 995 - (2021) [10.3390/molecules26040995]
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Journal Article
Quantum versus classical dynamics in spin models: Chains, ladders, and square lattices
Physical review / B 104(5), 054415 (2021) [10.1103/PhysRevB.104.054415]
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Contribution to a conference proceedings
LAION-400M: Open Dataset of CLIP-Filtered 400 Million Image-Text Pairs
NeurIPS Workshop Datacentric AI, DCAI2021, onlineonline, online, 14 Dec 2021 - 14 Dec 2021
5 p. (2021)
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Journal Article
Can deep learning beat numerical weather prediction?
Philosophical transactions of the Royal Society of London / A 379(2194), 20200097 (2021) [10.1098/rsta.2020.0097] special issue: "Machine learning for weather and climate modelling"
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Contribution to a conference proceedings/Contribution to a book
Enhancing Large Batch Size Training of Deep Models for Remote Sensing Applications
2021 IEEE International Geoscience and Remote Sensing Symposium IGARSS : [Proceedings] - IEEE, 2021. - ISBN 978-1-6654-0369-6 - doi:10.1109/IGARSS47720.2021.9555136
IEEE International Geoscience and Remote Sensing Symposium, IGARSS 2021, BrusselsBrussels, Belgium, 12 Jul 2021 - 16 Jul 2021
IEEE 1583-1586 (2021) [10.1109/IGARSS47720.2021.9555136]
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Journal Article
A High-Performance Multispectral Adaptation GAN for Harmonizing Dense Time Series of Landsat-8 and Sentinel-2 Images
IEEE journal of selected topics in applied earth observations and remote sensing 14, 10134 - 10146 (2021) [10.1109/JSTARS.2021.3115604]
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Journal Article
Biometric covariates and outcome in COVID-19 patients: are we looking close enough?
BMC infectious diseases 21(1), 1136 (2021) [10.1186/s12879-021-06823-z]
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Journal Article
Trends in the hyperfine interactions of magnetic adatoms on thin insulating layers
npj computational materials 7(1), 87 (2021) [10.1038/s41524-021-00556-y]
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Journal Article
$P$-wave nucleon-pion scattering amplitude in the $\Delta(1232)$ channel from lattice QCD
Physical review / D 103(9), 094508 (2021) [10.1103/PhysRevD.103.094508]
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Dissertation / PhD Thesis
Baryon Resonances on the lattice: the P-wave nucleon-pion scattering amplitude in the ∆(1232) channel
xiii, 111 (2021) = Dissertation, Wuppertal, 2021
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Journal Article
Magnetized current filaments as a source of circularly polarized light
Journal of plasma physics 87(1), 905870114 (2021) [10.1017/S0022377821000040]
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Contribution to a conference proceedings/Contribution to a book
Using Performance Analysis Tools for a Parallel-in-Time Integrator
Parallel-in-Time Integration Methods
9th Workshop on Parallel-in-Time Integration, PinT9, onlineonline, online, 8 Jun 2020 - 12 Jun 2020
Cham : Springer International Publishing, Springer Proceedings in Mathematics & Statistics 356, 51 - 80 (2021) [10.1007/978-3-030-75933-9_3]
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Contribution to a conference proceedings/Contribution to a book
Modular Supercomputing for Neuroscience
Brain-Inspired Computing / Amunts, Katrin (Editor) [https://orcid.org/0000-0001-5828-0867] ; Cham : Springer International Publishing, 2021, Chapter 5 ; ISSN: 0302-9743=1611-3349 ; ISBN: 978-3-030-82426-6=978-3-030-82427-3 ; doi:10.1007/978-3-030-82427-3
BrainComp 2019 - Workshop on Brain-Inspired Computing, CetraroCetraro, Italy, 15 Jul 2019 - 19 Jul 2019
Cham : Springer International Publishing, Lecture Notes in Computer Science 12339, 63-80 (2021) [10.1007/978-3-030-82427-3_5]
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Contribution to a book
The DEEP-EST project
Porting applications to a Modular Supercomputer - Experiences from the DEEP-EST project
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Schriften des Forschungszentrums Jülich IAS Series 48, 9-25 (2021)
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Contribution to a book
Critical Analysis of the Modular Supercomputing Architecture
Porting applications to a Modular Supercomputer - Experiences from the DEEP-EST project
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag Jülich, Schriften des Forschungszentrums Jülich IAS Series 48, 233-245 (2021)
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Journal Article
JURECA: Data Centric and Booster Modules implementing the Modular Supercomputing Architecture at Jülich Supercomputing Centre
Journal of large-scale research facilities 7, A182 (2021) [10.17815/jlsrf-7-182]
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Journal Article
Nintedanib targets KIT D816V neoplastic cells derived from induced pluripotent stem cells of systemic mastocytosis
Blood 137(15), 2070 - 2084 (2021) [10.1182/blood.2019004509]
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Contribution to a conference proceedings
Exploring the impact of node failures on the resource allocation for parallel jobs
14th Workshop on Resiliency in High Performance Computing (Resilience) in Clusters, Clouds, and Grids, LisbonLisbon, Portugal, 30 Aug 2021 - 30 Aug 2021
12 p. (2021)
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Journal Article
JUSUF: Modular Tier-2 Supercomputing and Cloud Infrastructure at Jülich Supercomputing Centre
Journal of large-scale research facilities 7, A179 (2021) [10.17815/jlsrf-7-179]
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Journal Article
pyrexMD: Workflow-Orientated Python Package for Replica Exchange Molecular Dynamics
The journal of open source software 6(68), 3325 - (2021) [10.21105/joss.03325]
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Journal Article
An effective simulation- and measurement-based workflow for enhanced diagnostics in rhinology
Medical & biological engineering & computing 60(2), 365-391 (2021) [10.1007/s11517-021-02446-3]
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Journal Article
Dynamic particle swarm optimization of biomolecular simulation parameters with flexible objective functions
Nature machine intelligence 3(8), 727 - 734 (2021) [10.1038/s42256-021-00366-3]
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Journal Article
Mountain-wave-induced polar stratospheric clouds and their representation in the global chemistry model ICON-ART
Atmospheric chemistry and physics 21(12), 9515 - 9543 (2021) [10.5194/acp-21-9515-2021]
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Bachelor Thesis
Untersuchung der Auswirkung unterschiedlicher Prozess-Pinning Strategien anhand von verschiedenen Benchmarks auf HPC Systemen
59 p. (2021) = Bachelorarbeit, FH Aachen, 2021
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Journal Article
Solution to the modified Helmholtz equation for arbitrary periodic charge densities
Frontiers in physics 8, 618142 (2021) [10.3389/fphy.2020.618142]
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Contribution to a conference proceedings/Contribution to a book
Including in situ visualization and analysis in PDI
ISC High Performance Digital 2021 International Workshops, FrankfurtFrankfurt, Germany, 24 Jun 2021 - 2 Jul 2021
Cham : Springer, Lecture Notes in Computer Science 12761, 508-512 (2021) [10.1007/978-3-030-90539-2_35]
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Journal Article
Using vertical phase differences to better resolve 3D gravity wave structure
Atmospheric measurement techniques 14(9), 5873 - 5886 (2021) [10.5194/amt-14-5873-2021]
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Journal Article
Machine learning to alleviate Hubbard-model sign problems
Physical review / B 103(12), 125153 (2021) [10.1103/PhysRevB.103.125153]
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Bachelor Thesis
Evolving autonomous agents with simulated brains using L2L and Netlogo
Jülich 76 p (2021) = Bachelorarbeit, RWTH Aachen, 2021
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Contribution to a conference proceedings/Contribution to a book
Multilevel simulation-based co-design of next generation HPC microprocessors
SC workshop proceedings
The 12th International Workshop on Performance Modeling, Benchmarking and Simulation of High-Performance Computer Systems, PMBS21, St. LouisSt. Louis, USA, 15 Nov 2021 - 15 Nov 2021
12 p. (2021)
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Dissertation / PhD Thesis
RNA Structure Prediction Guided by Co-evolutionary Information | Method Development and Applications
111 p. (2021) = Dissertation, Duisburg/ Essen, 2021
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Journal Article
CoCoNet—boosting RNA contact prediction by convolutional neural networks
Nucleic acids research 49(22), 12661 - 12672 (2021) [10.1093/nar/gkab1144]
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Journal Article
Solving the Bethe-Salpeter equation on massively parallel architectures
Computer physics communications 267, 108081 (2021) [10.1016/j.cpc.2021.108081]
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Journal Article
Empirical evidence for deep convection being a major source of stratospheric ice clouds over North America
Atmospheric chemistry and physics 21(13), 10457 - 10475 (2021) [10.5194/acp-21-10457-2021]
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Journal Article
The two redox states of the human NEET proteins’ [2Fe–2S] clusters
Journal of biological inorganic chemistry 26, 763–774 (2021) [10.1007/s00775-021-01890-8]
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