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Miriam Menzel's Publications

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Contribution to a conference proceedings/Contribution to a book  ;  ;  ;  ;  ;  ;  ;
Independent Component Analysis for Noise and Artifact Removal in Three-Dimensional Polarized Light Imaging
Brain-Inspired Computing / Amunts, Katrin (Editor)
4th International Workshop on Brain-Inspired Computing, CetraroCetraro, Italy, 15 Jul 2019 - 19 Jul 20192019-07-152019-07-19
Cham : Springer International Publishing, Lecture Notes in Computer Science 12339, 90 - 102 () [10.1007/978-3-030-82427-3_7] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Autofluorescence enhancement for label-free imaging of myelinated fibers in mammalian brains
Scientific reports 11(1), 8038 () [10.1038/s41598-021-86092-7] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Contribution to a conference proceedings
Scatterometry on whole brain sections using Scattered Light Imaging
2021 OSA Biophotonics Congress: Optics in the Life Sciences, VirtuellVirtuell, USA, 12 Apr 2021 - 16 Apr 20212021-04-122021-04-16 OSA Technical Digest (Optical Society of America) BTu1B.2 () BibTeX | EndNote: XML, Text | RIS

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Scattered Light Imaging: Resolving the substructure of nerve fiber crossings in whole brain sections with micrometer resolution
NeuroImage 233, 117952 - () [10.1016/j.neuroimage.2021.117952] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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SLIX: A Python package for fully automated evaluation of Scattered Light Imaging measurements on brain tissue
The journal of open source software 5(54), 2675 () [10.21105/joss.02675] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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MAGIC: A label-free fluorescence method for 3D high-resolution reconstruction of myelinated fibers in large volumes
[10.1101/2020.07.28.225011] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Coherent Fourier scatterometry reveals nerve fiber crossings in the brain
Biomedical optics express 11(8), 4735 - 4758 () [10.1364/BOE.397604] special issue: "Biophotonics (2020)" OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Light Scattering Measurements Enable an Improved Reconstruction of Nerve Fiber Crossings
Biophotonics Congress: Biomedical Optics 2020 (Translational, Microscopy, OCT, OTS, BRAIN), Fort LauderdaleFort Lauderdale, USA, 20 Apr 2020 - 23 Apr 20202020-04-202020-04-23 BW2C.3 () [10.1364/BRAIN.2020.BW2C.3] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Toward a High-Resolution Reconstruction of 3D Nerve Fiber Architectures and Crossings in the Brain Using Light Scattering Measurements and Finite-Difference Time-Domain Simulations
Physical review / X 10(2), 021002 () [10.1103/PhysRevX.10.021002] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Transmittance and Diattenuation Measurements Reveal Different Properties of Brain Tissue
Biophotonics Congress: Optics in the Life Sciences Congress 2019, TucsonTucson, USA, 14 Apr 2019 - 17 Apr 20192019-04-142019-04-17 Optical Society of America BW4A.7 ()   Download fulltextFulltext BibTeX | EndNote: XML, Text | RIS

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FAConstructor: an interactive tool for geometric modeling of nerve fiber architectures in the brain
International journal of computer assisted radiology and surgery 14(11), 1881-1889 () [10.1007/s11548-019-02053-6] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Diattenuation Imaging reveals different brain tissue properties
Scientific reports 9(1), 1939 () [10.1038/s41598-019-38506-w] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Diattenuation Imaging reveals different brain tissue properties
() OpenAccess  Download fulltext Files  Download fulltextFulltext Download fulltextFulltext by arXiv.org Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Finite-Difference Time-Domain simulations of transmission microscopy enable a better interpretation of 3D nerve fiber architectures in the brain
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http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Book/Dissertation / PhD Thesis
Finite-Difference Time-Domain Simulations Assisting to Reconstruct the Brain's Nerve Fiber Architecture by 3D Polarized Light Imaging
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Schriften des Forschungszentrums Jülich. Reihe Schlüsseltechnologien / Key Technologies 188, IX, 296 S. () = RWTH Aachen, Diss., 2018 OpenAccess  Download fulltext Files  Download fulltextFulltext Download fulltextFulltext by OpenAccess repository Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Polarized Light Imaging and Two-Photon Fluorescence Microscopy correlative approach for 3D reconstruction of the orientation of myelinated fibers
Optics in the Life Sciences Congress : [Proceedings] - OSA Washington, D.C., 2017. - ISBN 978-1-943580-25-5 - doi:10.1364/BRAIN.2017.BrW4B.5
Optics and the Brain, San DiegoSan Diego, California, 2 Apr 2017 - 5 Apr 20172017-04-022017-04-05
BrW4B.5 () [10.1364/BRAIN.2017.BrW4B.5] BibTeX | EndNote: XML, Text | RIS

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Diattenuation of Brain Tissue and its Impact on 3D Polarized Light Imaging
Biomedical optics express 8(7), 3163-3197 () [10.1364/BOE.8.003163] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Contribution to a conference proceedings/Contribution to a book  ;  ;  ;
Finite-Difference Time-Domain Simulation for Three-dimensional Polarized Light Imaging
Brain-Inspired Computing
International Workshop on Brain-Inspired Computing, BrainComp 2015, CetraroCetraro, Italy, 6 Jul 2015 - 10 Jul 20152015-07-062015-07-10
Luxemburg : Springer, Lecture Notes in Computer Science 10087, 73-85 () [10.1007/978-3-319-50862-7_6]   Download fulltextFulltext BibTeX | EndNote: XML, Text | RIS

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Simulation-based validation of the physical model in 3D Polarized Light Imaging
Optics and the Brain 2015
Optics in the Life Sciences, VancouverVancouver, Canada, 12 Apr 2015 - 15 Apr 20152015-04-122015-04-15
Washington, DC : OSA, The Optical Society, OSA technical digest (online) JT3A.33 () [10.1364/BODA.2015.JT3A.33] BibTeX | EndNote: XML, Text | RIS

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A Jones matrix formalism for simulating three-dimensional polarized light imaging of brain tissue
Interface 12(111), 20150734 () [10.1098/rsif.2015.0734]  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Understanding fiber mixture by simulation in 3D Polarized Light Imaging
NeuroImage 111, 464–475 () [10.1016/j.neuroimage.2015.02.020]  Download fulltext Files BibTeX | EndNote: XML, Text | RIS